3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05209

Details:

PFam ID : PF05209

PFam Domain Description : Septum formation inhibitor MinC, N-terminal domain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 265

Average sequence length: 101.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05209	MINC_PASMU_1_104	53.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05209	Q47JE7_DECAR_26_142	99.6

Sequence based PCA Plot of the family - PF05209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay