3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05285

Details:

PFam ID : PF05285

PFam Domain Description : SDA1

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 209

Average sequence length: 250.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05285	Q07GB0_XENTR_519_644	60.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05285	A8BNX5_GIAIC_752_857	98.0

Sequence based PCA Plot of the family - PF05285 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=266 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay