3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06933

Details:

PFam ID : PF06933

PFam Domain Description : Special lobe-specific silk protein SSP160

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 397

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06933	F2WTJ3_9ADEN_4_115	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06933	Q23766_9DIPT_1_742	100

Sequence based PCA Plot of the family - PF06933 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=734 Length=8
Motif3 Start=723 Length=8
Motif4 Start=242 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay