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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05756
Details:

PFam ID : PF05756

PFam Domain Description : S-antigen protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 16

Average sequence length: 53.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05756C4J7P1_MAIZE_1_97No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05756Q9GZ89_PLAFA_1_55100
Sequence based PCA Plot of the family - PF05756 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay