3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09936

Details:

PFam ID : PF09936

PFam Domain Description : SAM-dependent RNA methyltransferase

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 96

Average sequence length: 180.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09936	D9YGG0_9DELT_243_335	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09936	A9F3M9_SORC5_1_187	100

Sequence based PCA Plot of the family - PF09936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=138 Length=8
Motif2 Start=7 Length=8
Motif3 Start=24 Length=11
Motif4 Start=168 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay