3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12793

Details:

PFam ID : PF12793

PFam Domain Description : Sugar transport-related sRNA regulator N-term

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 201

Average sequence length: 112.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12793	E6SMR9_THEM7_43_128	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12793	Q9KDQ2_BACHD_2_122	100

Sequence based PCA Plot of the family - PF12793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=8
Motif4 Start=50 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay