3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07189

Details:

PFam ID : PF07189

PFam Domain Description : Splicing factor 3B subunit 10 (SF3b10)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 98

Average sequence length: 74.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07189	B4UN39_CANGA_2_61	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07189	C5LGZ1_9ALVE_1_42	98.9

Sequence based PCA Plot of the family - PF07189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=51 Length=8
Motif2 Start=10 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay