3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05577

Details:

PFam ID : PF05577

PFam Domain Description : Serine carboxypeptidase S28

Number of Sequence in 50% Dataset : 218

Number of Sequence in Full Dataset : 655

Average sequence length: 335.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05577	Q1DA49_MYXXD_213_658	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05577	C4WWU8_ACYPI_1_252	100

Sequence based PCA Plot of the family - PF05577 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=103 Length=8
Motif3 Start=124 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay