3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00916

Details:

PFam ID : PF00916

PFam Domain Description : Sulfate transporter family

Number of Sequence in 50% Dataset : 401

Number of Sequence in Full Dataset : 2780

Average sequence length: 247.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00916	B8PL76_POSPM_78_322	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00916	E5SSG2_TRISP_264_387	100

Sequence based PCA Plot of the family - PF00916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay