3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12830

Details:

PFam ID : PF12830

PFam Domain Description : Sister chromatid cohesion C-terminus

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 122

Average sequence length: 174.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12830	B3S1Q2_TRIAD_1301_1383	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12830	E6ZQR6_9BASI_1814_2002	99.1

Sequence based PCA Plot of the family - PF12830 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay