3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04099

Details:

PFam ID : PF04099

PFam Domain Description : Sybindin-like family

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 294

Average sequence length: 143.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04099	A0DGB1_PARTE_7_162	79.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04099	Q4PEV7_USTMA_100_170	100

Sequence based PCA Plot of the family - PF04099 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=105 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay