3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01549

Details:

PFam ID : PF01549

PFam Domain Description : ShK domain-like

Number of Sequence in 50% Dataset : 230

Number of Sequence in Full Dataset : 1092

Average sequence length: 35.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01549	Q0S0F0_RHOSR_1_92	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01549	Q2VU37_PINFU_314_368	77

Sequence based PCA Plot of the family - PF01549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=18
Motif2 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay