3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11942

Details:

PFam ID : PF11942

PFam Domain Description : Spt5 transcription elongation factor, acidic N-terminal

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 104

Average sequence length: 93.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11942	E3L6R8_PUCGT_173_279	19.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11942	E3L6R8_PUCGT_173_279	91.2

Sequence based PCA Plot of the family - PF11942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay