3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04158

Details:

PFam ID : PF04158

PFam Domain Description : Sof1-like domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 140

Average sequence length: 85.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04158	A2EGV4_TRIVA_355_443	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04158	D2W1H9_NAEGR_418_507	100

Sequence based PCA Plot of the family - PF04158 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=64 Length=8
Motif4 Start=28 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay