3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12118

Details:

PFam ID : PF12118

PFam Domain Description : SprA-related family

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 110

Average sequence length: 237.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12118	A8FUV6_SHESH_6_415	87.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12118	A3I800_9BACI_99_184	100

Sequence based PCA Plot of the family - PF12118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay