3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00103

Details:

PFam ID : PF00103

PFam Domain Description : Somatotropin hormone family

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 377

Average sequence length: 164.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00103	B2BIQ1_SCYMA_1_78	69.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00103	Q9TRI9_MACRG_1_40	99.4

Sequence based PCA Plot of the family - PF00103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay