3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02175

Details:

PFam ID : PF02175

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srb

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 47

Average sequence length: 197.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02175	Q7YTI1_CAEEL_37_272	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02175	SRB15_CAEEL_16_247	100

Sequence based PCA Plot of the family - PF02175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8
Motif4 Start=203 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay