3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10564

Details:

PFam ID : PF10564

PFam Domain Description : Sialic-acid binding micronemal adhesive repeat

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 52

Average sequence length: 89.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10564	A5K6I2_PLAVS_4_74	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10564	F0VMS0_NEOCA_153_280	100

Sequence based PCA Plot of the family - PF10564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=18
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay