3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01680

Details:

PFam ID : PF01680

PFam Domain Description : SOR/SNZ family

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 393

Average sequence length: 199.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01680	D7U0J6_VITVI_117_155	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01680	D2VI85_NAEGR_5_160	98.9

Sequence based PCA Plot of the family - PF01680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=32 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay