3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10777

Details:

PFam ID : PF10777

PFam Domain Description : sigma70 family sigma factor YlaC

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 40

Average sequence length: 149.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10777	C4S829_YERMO_1_93	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10777	C6C999_DICDC_1_155	97.4

Sequence based PCA Plot of the family - PF10777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=76 Length=8
Motif3 Start=21 Length=8
Motif4 Start=31 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay