3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08486

Details:

PFam ID : PF08486

PFam Domain Description : Stage II sporulation protein

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 649

Average sequence length: 99

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08486	B1QL97_CLOBO_1_97	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08486	A5Z677_9FIRM_46_166	100

Sequence based PCA Plot of the family - PF08486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=8
Motif2 Start=30 Length=18
Motif3 Start=110 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay