3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01514

Details:

PFam ID : PF01514

PFam Domain Description : Secretory protein of YscJ/FliF family

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 785

Average sequence length: 202.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01514	B2NDE7_ECOLX_1_97	57.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01514	B2NDE7_ECOLX_1_97	100

Sequence based PCA Plot of the family - PF01514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay