3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14153

Details:

PFam ID : PF14153

PFam Domain Description : Spore coat protein CotO

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 53

Average sequence length: 151.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14153	A6CSU5_9BACI_2_185	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14153	A7GMA0_BACCN_3_268	100

Sequence based PCA Plot of the family - PF14153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay