3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05276

Details:

PFam ID : PF05276

PFam Domain Description : SH3 domain-binding protein 5 (SH3BP5)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 70

Average sequence length: 192.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05276	E9IPE2_SOLIN_162_230	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05276	A7RRR8_NEMVE_1_138	100

Sequence based PCA Plot of the family - PF05276 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=11
Motif2 Start=62 Length=8
Motif3 Start=169 Length=8
Motif4 Start=215 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay