3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00435

Details:

PFam ID : PF00435

PFam Domain Description : Spectrin repeat

Number of Sequence in 50% Dataset : 841

Number of Sequence in Full Dataset : 3166

Average sequence length: 102.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00435	C3YXT3_BRAFL_790_858	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00435	C3YBC4_BRAFL_4965_5092	99.4

Sequence based PCA Plot of the family - PF00435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=43 Length=8
Motif3 Start=1 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay