3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04499

Details:

PFam ID : PF04499

PFam Domain Description : SIT4 phosphatase-associated protein

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 283

Average sequence length: 287.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04499	A5BNG9_VITVI_115_231	74.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04499	A4S0J8_OSTLU_3_336	96.4

Sequence based PCA Plot of the family - PF04499 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=413 Length=8
Motif3 Start=654 Length=8
Motif4 Start=716 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay