3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09346

Details:

PFam ID : PF09346

PFam Domain Description : SMI1 / KNR4 family (SUKH-1)

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 604

Average sequence length: 135.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09346	A1ZKI4_9BACT_13_114	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09346	SMI1_DEBHA_98_296	100

Sequence based PCA Plot of the family - PF09346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=89 Length=8
Motif2 Start=1 Length=11
Motif3 Start=104 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay