3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12638

Details:

PFam ID : PF12638

PFam Domain Description : Staygreen protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 65

Average sequence length: 138.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12638	D7TW97_VITVI_48_122	55

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12638	A8IL90_CHLRE_74_228	100

Sequence based PCA Plot of the family - PF12638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=8
Motif2 Start=130 Length=8
Motif3 Start=97 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay