3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13791

Details:

PFam ID : PF13791

PFam Domain Description : Sigma factor regulator C-terminal

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 105

Average sequence length: 145.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13791	A0AEU1_LISW6_183_340	65.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13791	E8Q8P5_STRED_162_348	100

Sequence based PCA Plot of the family - PF13791 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=30 Length=18
Motif2 Start=12 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay