3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03775

Details:

PFam ID : PF03775

PFam Domain Description : Septum formation inhibitor MinC, C-terminal domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 534

Average sequence length: 104.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03775	E1NSN7_9LACO_122_199	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03775	A7VBB1_9CLOT_139_245	100

Sequence based PCA Plot of the family - PF03775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=25 Length=8
Motif3 Start=76 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay