3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01641

Details:

PFam ID : PF01641

PFam Domain Description : SelR domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 1477

Average sequence length: 121.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01641	A7LVL6_BACOV_263_486	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01641	Q22W57_TETTH_61_199	100

Sequence based PCA Plot of the family - PF01641 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=32 Length=8
Motif2 Start=18 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay