3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04232

Details:

PFam ID : PF04232

PFam Domain Description : Stage V sporulation protein S (SpoVS)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 144

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04232	Q0ACY2_NITEC_1_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04232	C1FIY0_MICSR_75_162	100

Sequence based PCA Plot of the family - PF04232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8
Motif3 Start=35 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay