3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09560

Details:

PFam ID : PF09560

PFam Domain Description : Sporulation protein YunB (Spo_YunB)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 100

Average sequence length: 92.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09560	B8D2A1_HALOH_107_201	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09560	B8D2A1_HALOH_107_201	100

Sequence based PCA Plot of the family - PF09560 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=21 Length=8
Motif3 Start=86 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay