3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05462

Details:

PFam ID : PF05462

PFam Domain Description : Slime mold cyclic AMP receptor

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 122

Average sequence length: 215.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05462	E9QEV3_DANRE_3_127	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05462	Q22W70_TETTH_7_319	100

Sequence based PCA Plot of the family - PF05462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=169 Length=8
Motif4 Start=154 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay