3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05116

Details:

PFam ID : PF05116

PFam Domain Description : Sucrose-6F-phosphate phosphohydrolase

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 360

Average sequence length: 223.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05116	A1VWP8_POLNA_152_246	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05116	A5BLG1_VITVI_1830_1920	100

Sequence based PCA Plot of the family - PF05116 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=18
Motif2 Start=104 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay