3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00747

Details:

PFam ID : PF00747

PFam Domain Description : ssDNA binding protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 54

Average sequence length: 798.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00747	Q66051_9GAMA_2_166	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00747	DNBI_PSHV1_8_1146	100

Sequence based PCA Plot of the family - PF00747 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=48 Length=8
Motif3 Start=619 Length=8
Motif4 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay