3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01202

Details:

PFam ID : PF01202

PFam Domain Description : Shikimate kinase

Number of Sequence in 50% Dataset : 390

Number of Sequence in Full Dataset : 2057

Average sequence length: 154.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01202	D4XTY6_ACIHA_9_61	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01202	C1E0D7_MICSR_77_203	100

Sequence based PCA Plot of the family - PF01202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=64 Length=8
Motif2 Start=91 Length=11
Motif3 Start=20 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay