3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07348

Details:

PFam ID : PF07348

PFam Domain Description : Syd protein (SUKH-2)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 106

Average sequence length: 166.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07348	E1EJM1_VIBPA_1_80	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07348	SYDP_COLP3_8_192	100

Sequence based PCA Plot of the family - PF07348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=134 Length=8
Motif2 Start=118 Length=8
Motif3 Start=86 Length=8
Motif4 Start=152 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay