3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01206

Details:

PFam ID : PF01206

PFam Domain Description : SirA-like protein

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 1440

Average sequence length: 69.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01206	B3CGE4_9BACE_2_68	82.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01206	C0QLP6_DESAH_13_88	100

Sequence based PCA Plot of the family - PF01206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=39 Length=8
Motif3 Start=18 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay