3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02199

Details:

PFam ID : PF02199

PFam Domain Description : Saposin A-type domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 94

Average sequence length: 33.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02199	A7SXX5_NEMVE_435_468	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02199	F2D647_HORVD_744_777	98.9

Sequence based PCA Plot of the family - PF02199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=8
Motif2 Start=5 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay