3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04628

Details:

PFam ID : PF04628

PFam Domain Description : Sedlin, N-terminal conserved region

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 268

Average sequence length: 136.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04628	A0BXE5_PARTE_8_131	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04628	Q4PCM0_USTMA_13_185	100

Sequence based PCA Plot of the family - PF04628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=3 Length=18
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay