3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12876

Details:

PFam ID : PF12876

PFam Domain Description : Sugar-binding cellulase-like

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 139

Average sequence length: 87.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12876	D1N103_9BACT_163_248	94

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12876	C1AWE1_RHOOB_169_259	99.2

Sequence based PCA Plot of the family - PF12876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=107 Length=8
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay