3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04546

Details:

PFam ID : PF04546

PFam Domain Description : Sigma-70, non-essential region

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 682

Average sequence length: 209.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04546	A2TIV0_9ALPH_74_268	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04546	D5BP42_PUNMI_153_409	100

Sequence based PCA Plot of the family - PF04546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay