3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03749

Details:

PFam ID : PF03749

PFam Domain Description : Sugar fermentation stimulation protein

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 572

Average sequence length: 206.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03749	D8G7B8_9CYAN_11_338	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03749	F0YBZ7_9STRA_19_251	100

Sequence based PCA Plot of the family - PF03749 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=158 Length=8
Motif2 Start=128 Length=8
Motif3 Start=23 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay