3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04355 Details: PFam ID : PF04355 PFam Domain Description : SmpA / OmlA family Number of Sequence in 50% Dataset : 92 Number of Sequence in Full Dataset : 535 Average sequence length: 71.5 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04355B6BTY7_9PROT_204_332No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04355Q0A6M5_ALHEH_53_125100 Sequence based PCA Plot of the family - PF04355 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=1 Length=8Motif2 Start=78 Length=8Motif3 Start=22 Length=18 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04355
PFam Domain Description : SmpA / OmlA family
Number of Sequence in 50% Dataset : 92
Number of Sequence in Full Dataset : 535
Average sequence length: 71.5
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER