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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04355
Details:

PFam ID : PF04355

PFam Domain Description : SmpA / OmlA family

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 535

Average sequence length: 71.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04355B6BTY7_9PROT_204_332No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04355Q0A6M5_ALHEH_53_125100
Sequence based PCA Plot of the family - PF04355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=78 Length=8
Motif3 Start=22 Length=18
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay