3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09546

Details:

PFam ID : PF09546

PFam Domain Description : Stage III sporulation protein AE (spore_III_AE)

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 139

Average sequence length: 316.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09546	C3DPX8_BACTS_60_191	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09546	D9SLF5_CLOC7_81_411	100

Sequence based PCA Plot of the family - PF09546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay