3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07451

Details:

PFam ID : PF07451

PFam Domain Description : Stage V sporulation protein AD (SpoVAD)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 167

Average sequence length: 317.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07451	A8LH20_FRASN_12_108	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07451	Q3EM99_BACTI_5_233	100

Sequence based PCA Plot of the family - PF07451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=33 Length=8
Motif3 Start=58 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay