3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00804

Details:

PFam ID : PF00804

PFam Domain Description : Syntaxin

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 594

Average sequence length: 103.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00804	Q4CYJ1_TRYCR_48_181	14.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00804	C1C0X4_9MAXI_62_293	87

Sequence based PCA Plot of the family - PF00804 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=90 Length=8
Motif2 Start=131 Length=8
Motif3 Start=75 Length=11
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay