3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05384

Details:

PFam ID : PF05384

PFam Domain Description : Sensor protein DegS

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 77

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05384	B0WGK8_CULQU_43_72	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05384	A8MF71_ALKOO_12_170	100

Sequence based PCA Plot of the family - PF05384 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8
Motif3 Start=91 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay