3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13734

Details:

PFam ID : PF13734

PFam Domain Description : Spi protease inhibitor

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 61

Average sequence length: 105.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13734	D3IF47_9BACT_3_99	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13734	D2QDN0_SPILD_41_183	100

Sequence based PCA Plot of the family - PF13734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay